Variant consequence: click a base, read the protein

Gene model

Strand

On the minus strand the transcript is the reverse complement of what the reference shows.

Variant type

Alternate base (plus strand)

Written on the plus strand, the way a VCF writes it.

Position (genomic)

Click a base on the ruler, or use the arrow keys with the picture focused.

Indel length

Inserted bases are GCA repeated; deletions remove this many bases from the position rightward.

Show

Codon bands Amino acids Splice motifs

Custom gene model

Plus-strand sequence

A, C, G and T only. Position 1 of this sequence is genomic coordinate 1001.

Exons (1-based, closed, within the sequence)

CDS start and end (positions of the A of ATG and the last base of the stop)

Gene, sequence, protein

coding exon UTR intron changed

Consequence-

Codon change-

Amino acid change-

Protein length-

Transcript length-